What happen if I am interested in a gene family other than GS? | A toy example

Downloading and installing MUSCLE and Clustal Omega | Performing alignment using the orthGS package | Performing alignment using the ape package | Performing alignment using the msa package | Performing alignment using the muscle package | Performing alignment integrating MUSCLE v5 in your R workflow

Orthologs from crop in model plants and vice versa

Orthologs versus paralogs | Glutamine synthetase from conifers | Phylogenetic reconciliation | GS1a orthology network beyond conifers | References