Package: orthGS 0.1.6

orthGS: Orthology vs Paralogy Relationships among Glutamine Synthetase from Plants

Tools to analyze and infer orthology and paralogy relationships between glutamine synthetase proteins in seed plants.

Authors:Elena Aledo [aut, cre, cph], Juan-Carlos Aledo [aut]

orthGS_0.1.6.tar.gz
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orthGS.pdf |orthGS.html✨
orthGS/json (API)
NEWS

# Install 'orthGS' in R:
install.packages('orthGS', repos = c('https://ealedo.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • A_selected - Adjacency Matrix for Orthology Graph
  • AngGym - Angiosperms Gymnosperms
  • agf - Angiosperms Gymnosperms Ferns
  • sdf - Seed Plants and Ferns GS
  • selected_tr - Ultrametric Rooted Seed Plants Tree

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

3.80 score 21 scripts 162 downloads 11 exports 60 dependencies

Last updated 3 months agofrom:303c850755. Checks:6 OK, 2 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 31 2025
R-4.5-winOKJan 31 2025
R-4.5-macOKJan 31 2025
R-4.5-linuxOKJan 31 2025
R-4.4-winOKJan 31 2025
R-4.4-macOKJan 31 2025
R-4.3-winNOTEJan 31 2025
R-4.3-macNOTEJan 31 2025

Exports:coltipsgapless_msagetseqGSmadRootmapTreesmltreemsaorthGorthPspeciesGSsubsetGS

Dependencies:ade4apebio3dbitbit64bitopscastorcliclusterGenerationcodacodetoolscolorspacecombinatcpp11DEoptimdigestdoParallelexpmfastmatchforeachgenericsglueigraphiteratorsjsonlitelatticelifecyclemagrittrmapsMASSMatrixmnormtnaturalsortnlmenumDerivoptimParallelphangornphytoolspixmappkgconfigPlotToolsquadprogR.cacheR.methodsS3R.ooR.utilsrbibutilsRcppRcppArmadilloRcppEigenRCurlRdpackrlangRSpectrascatterplot3dsegmentedseqinrspTreeToolsvctrs

Performing Sequence Alignment in R

Rendered fromPerforming_Sequence_Alignment_in_R.Rmdusingknitr::rmarkdownon Jan 31 2025.

Last update: 2024-12-02
Started: 2024-12-02

Searching for GS Orthologs

Elena Aledo

Rendered fromSearching_for_Orthologous.Rmdusingknitr::rmarkdownon Jan 31 2025.

Last update: 2024-12-02
Started: 2024-09-18

Glutamine Synthetase from Conifers: Unraveling the Hidden Paralogs

Elena Aledo

Rendered fromUnraveling_the_hiden_paralogous.Rmdusingknitr::rmarkdownon Jan 31 2025.

Last update: 2024-12-02
Started: 2024-09-18